Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.64 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   3.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   3.4  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   3.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 267 HVEHRMSLYIVIRNICLHSKLSHRYKTSIQH 359
           H +HR   ++ I +  L  KL+H   +S+Q+
Sbjct: 2   HFKHRKQRFVDIGDSLLTLKLTHALSSSVQN 32


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 503 EFYANF*XQ*YYFLLAHSLIIVFFLIKKLAVYEYYNI 393
           EFY  F  + +   +   +   FF++ K+ +  Y N+
Sbjct: 143 EFYKQFAIEYFQMYVLFFVNFAFFVVVKMLLVRYRNL 179


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 503 EFYANF*XQ*YYFLLAHSLIIVFFLIKKLAVYEYYNI 393
           EFY  F  + +   +   +   FF++ K+ +  Y N+
Sbjct: 143 EFYKQFAIEYFQMYVLFFVNFAFFVVVKMLLVRYRNL 179


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 467 FLLAHSLIIVFFLIKKLAVYEYYNII 390
           F   H+L+I+F  +  L V  YY +I
Sbjct: 266 FYGVHTLLILFSCLLHLVVTPYYLLI 291


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 259 TPFMLSIECPYTL*YGTFVYILSFLIVTKHL 351
           T  +L + C Y   Y   ++  +F+I T HL
Sbjct: 249 TVHLLLLVCIYYFYYMHLLFCCAFIIFTMHL 279



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 473 YYFLLAHSLIIVFFLIKKLAVYEYY 399
           YYF  A  L  V  L+     Y YY
Sbjct: 239 YYFYYAFILFTVHLLLLVCIYYFYY 263


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = +3

Query: 3   PKNVFLMKNKYNKIVLWQFHNNINI 77
           P  +F + N    ++ W+F   +N+
Sbjct: 241 PNWLFFLANFLTNLLFWEFDQIVNV 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,845
Number of Sequences: 336
Number of extensions: 3122
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)