Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   0.90 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   2.7  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   4.8  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.3  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 338 LQNIYSTLNNTIHLITRKLYYNTHTPLIF*LKKKQLLNYV--QAKSSIIXIRNLHKTLDQ 511
           L N Y T    + L+T  +   T  PL+  +      NY+  QA  SII  R   + L +
Sbjct: 227 LPNYYETSPLVLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQASGSIIQRRRKIRRLKR 286

Query: 512 VFR 520
             R
Sbjct: 287 AIR 289


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 155 IKINGGRVANN*KCYQNVCIFTHYWKLLH 241
           ++I+ GR+A   KC + VC  T+  +L+H
Sbjct: 335 VEIDRGRIAEPIKCPREVCGATNAMQLIH 363


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 231 NFFMLF*RHDPIHVEHRMSLYIVIRNICLHSKLSHRYKTSIQHS 362
           N+ +L  R +  H E+   +   +RN+ +H++L+ R+   +  S
Sbjct: 106 NYSVLMNREEFSHTENASIMIQALRNLGVHARLNQRHDIVLAQS 149


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 449 LIIVFFLIKKLAVYEYYNIIF 387
           LII FF+   LA + Y+ ++F
Sbjct: 63  LIIFFFITSGLAYFSYFRVLF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,691
Number of Sequences: 5004
Number of extensions: 48821
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)