Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006629-6|AAK18929.1|  122|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical...    28   5.8  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    28   5.8  
Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006629-6|AAK18929.1|  122|Caenorhabditis elegans Hypothetical
           protein F12E12.1 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 91  KRHFYQKRENRNPTELHKYRIYKNQWRPCCQQLK 192
           KRH  QK E  +P ++   RIY   W+P    +K
Sbjct: 8   KRHTAQKDET-SPVQIRSRRIYPKGWKPHVSPVK 40


>AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical
           protein C29F9.13 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 301 ITMYRDIRCST*MGSCL*NNMKKFP 227
           +T+YR++ CS  +  CL NN K  P
Sbjct: 73  LTIYRNLYCSALLQHCLLNNQKSGP 97


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 244 NMKKFPVMRKDAYILVALLVVGNTAAIDFYIFCI 143
           ++  F +   DAY LVALL+      +   I CI
Sbjct: 178 SLPNFSIYEADAYFLVALLLTTTGGILSLLILCI 211


>Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical
           protein F55H2.5 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 464 LLAHSLIIVFFLIKKLAVYEYYNI 393
           ++ HS ++VF L+   AV++Y+N+
Sbjct: 98  VILHSCVLVFMLMALKAVFDYHNL 121


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 166 WRPCCQQLKVLPKCMHLYALLETSSCYSKDTTPFMLSIECPYTL*Y 303
           +R C   L+VL  C++ Y     SS Y   T  F+L+  C   + Y
Sbjct: 336 YRHCSNTLEVLNHCLNFYVFCIASSEY---TRAFLLNCNCLQNMMY 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,385
Number of Sequences: 27780
Number of extensions: 265546
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)