Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.75 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   6.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 214 DAYILVALLVVGNTAAIDFYIFCIYV 137
           DAY  +A +V+G   +I FYI   YV
Sbjct: 328 DAYPPLAAIVLGAIGSIVFYIISRYV 353


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 350 YSTLNNTIHLITRKLYYN 403
           Y+  NN  +   +KLYYN
Sbjct: 94  YNNYNNNYNNYNKKLYYN 111


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 329 FSSLQNIYSTLNNTIHLITRKLYYN 403
           +++  N Y+  NN  +   +KLYYN
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYYN 354


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 332 SSLQNIYSTLNNTIHLITRKLYYN 403
           ++  N Y+  NN  +   +KLYYN
Sbjct: 332 NNYNNNYNNYNNNNYNNYKKLYYN 355


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 303 VSQCIGTFDAQHEWG 259
           ++QCIG FD   E G
Sbjct: 178 ITQCIGAFDVTLESG 192


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 332 SSLQNIYSTLNNTIHLITRKLYYN 403
           SSL N     NN      +KLYYN
Sbjct: 316 SSLSNKTIHNNNNYKNYNKKLYYN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,079
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)