Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0135.Seq
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.31 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   0.31 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   6.8  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   ILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITS 137
           IL S  SLS      L+ SVTPT+   S+  +  TD   + I+S
Sbjct: 165 ILSSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISS 208


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 15  SPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYSDVVQ 194
           +P + SDP     + SV PTS   +  D   T+  ++ I +  +P       L   + +Q
Sbjct: 84  TPDTFSDPTAPSSAQSVPPTSSAETTADNSDTEMKLNPIPAYSVPADTTGSSLMEFNYIQ 143

Query: 195 R 197
           R
Sbjct: 144 R 144


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 6   ILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITS 137
           +L S  S+    +S+ S S+T  S   S    PST   +S I S
Sbjct: 538 VLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILS 581


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 340 SHCHRVISRILGRLNNRLCS 281
           SH   ++ ++LGR+N  LCS
Sbjct: 189 SHSFNLVDKLLGRINPLLCS 208


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 66  TPTSDDTSLRDTPSTDEGISQITSPDLPRQVVP-PKLTYSD 185
           +P  ++  L   PS ++      +PD PR ++P P L  +D
Sbjct: 501 SPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSAD 541


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 165 VVRLVLVNQGWLFVKYLHQLREYLSMRYRHLSASQIETAQN 43
           V+R+V V   +L++  +  L   L+ R+R   ASQ +T  N
Sbjct: 352 VLRMVWVFNKFLYLPLITFLGAVLAFRFRLKKASQFDTRWN 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,136
Number of Sequences: 5004
Number of extensions: 28182
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)