Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0135.Seq
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0143 - 8758198-8758338,8758799-8758906,8759150-8759189,875...    31   0.99 
11_02_0095 + 8252680-8253008,8253460-8253527,8254575-8254720,825...    29   2.3  
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524...    29   4.0  
05_01_0131 + 888247-888771,889092-889154                               28   7.0  

>11_02_0143 -
           8758198-8758338,8758799-8758906,8759150-8759189,
           8759396-8759637,8761057-8761281
          Length = 251

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +2

Query: 389 ELDTVKNAXSNNNPXKTERSVIXXIXTISVWLXEIQXKYXEKQCXEKNLQKRLEKLRSLH 568
           EL T +         + E+  I    T +V + EIQ +   K+     LQ+ LE+L++  
Sbjct: 148 ELSTTEQGNKTKCFSEPEKKAILAAKTTNV-MKEIQVELDAKKLESAVLQEELERLKARE 206

Query: 569 NYIXYLNE 592
           NY   +N+
Sbjct: 207 NYRHCIND 214


>11_02_0095 +
           8252680-8253008,8253460-8253527,8254575-8254720,
           8254829-8254915,8254964-8255071,8255532-8255585,
           8255668-8255904
          Length = 342

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +2

Query: 326 SMTVALXEPSVEKSYDLXINXELDTVKNAXSNNNPXKTERSVIXXIX--TISVWLXEIQX 499
           S T    EP  +   D+     L  +  +  +  P KT    +  +   T +V + EIQ 
Sbjct: 168 SKTKCFSEPVKKAIEDMHAREVL--ISPSVEDGQPAKTSIEAVSKLAAKTTNV-MKEIQV 224

Query: 500 KYXEKQCXEKNLQKRLEKLRSLHNYIXYLNEII 598
           +   K+     LQ+ LE+L++  NY   +N+++
Sbjct: 225 ELDAKKLEFAVLQEELERLKAQENYRHCINDVV 257


>12_01_0633 -
           5241098-5241283,5241361-5241453,5241555-5241615,
           5241703-5241813,5241960-5242145,5242229-5242590,
           5242730-5243152,5243159-5244382,5244468-5244707
          Length = 961

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 3   PILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYS 182
           P+L  PG L  P      + VT  +DD  L       E   +I  P+  +++ PPK    
Sbjct: 539 PVLPKPG-LGKPPRPPKRM-VTDKADDPELDKENPVPEVPPEIALPETAKEIAPPKTANG 596

Query: 183 D 185
           D
Sbjct: 597 D 597


>05_01_0131 + 888247-888771,889092-889154
          Length = 195

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +3

Query: 3   PILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYS 182
           P+L+   S  DPI S+      P S+   LR+ PS   G   ITS   P    PP LT  
Sbjct: 117 PVLREVPSGPDPITSDPPPPPPPLSEFPVLREVPS---GPDPITSDPPP---PPPPLTEF 170

Query: 183 DVVQR 197
            ++++
Sbjct: 171 PILRK 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,518,906
Number of Sequences: 37544
Number of extensions: 162655
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)