Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0135.Seq
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          33   0.25 
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)                   31   0.58 
SB_2409| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                29   3.1  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     28   5.4  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             27   9.4  
SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)                    27   9.4  

>SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +2

Query: 308 KNPTDNSMT-VALXEPSVEKSYDLXINXELDTVKNAXSNNNPXKTERSVIXXIXTISVWL 484
           +N   N +  VAL +    +  +   N  +  + +A     P    R  +  +    +W+
Sbjct: 276 RNSDQNKLANVALRDTLGREKKEFWTNKMIHILNHAGLGEIPINLIRQKLADVEQ-QIWI 334

Query: 485 XEIQXKYXEKQCXEKNLQKRLEKLRSLHNYIXYLNEIIDV 604
            EI      K    KN  + L K +S+HNY  YL+++ +V
Sbjct: 335 NEIYND-ERKDPRHKNKLRTLRKFKSVHNYEDYLSQVKNV 373


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +3

Query: 9    LQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYSD 185
            L S  SLSD + S  SLSV PTS         S+      +TS  LP   + P    SD
Sbjct: 903  LTSSSSLSDFLTSSSSLSVFPTSSSLPSDFVTSSSLPSDFLTSSSLPSDFLTPSSLLSD 961



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 9   LQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYSD 185
           L S  SLSD + S  SLSV PTS         S+      ++S  LP   +      SD
Sbjct: 638 LTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSSPSDFLSSSSLPSDFLTSSSLLSD 696



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 9    LQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYSD 185
            L S  SLSD + S  SLSV PTS         S+      ++S  LP   +      SD
Sbjct: 1233 LTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSSPSDFLSSSSLPSDFLTSSSLLSD 1291


>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
          Length = 897

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 51  LSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQV 158
           L L V    DD+ L   P  +E +SQI SP LP  V
Sbjct: 441 LGLLVKEKRDDSVLLSVPPLEEALSQIPSPPLPSYV 476


>SB_2409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 479 WLXEIQXKYXEKQCXEKNLQKRLEKLRSLHNYIXYLNEIIDV 604
           WL EI      K    KN  +  +K +S+HNY  YL+++ +V
Sbjct: 99  WLNEIYND-ERKDPRHKNKLRTFKKFKSVHNYEDYLSQVKNV 139


>SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +3

Query: 63  VTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKLTYSDVVQR 197
           +TP S   S+R    ++E I + TSPDL R+ +PP L + D  +R
Sbjct: 6   ITPISQ--SIRFAFLSEE-IVRFTSPDLTRKHIPPYLNFYDQSER 47


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 30  SDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQV 158
           SDP    L+LS TPT     +  +P T+ G+S     + P+ +
Sbjct: 332 SDPFPHPLALSPTPTQSHFDMVKSPWTEPGLSPTLMENSPQNL 374


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 6   ILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPR 152
           +L  PGS     N    + VTP S D S+    S D   +    PD+ R
Sbjct: 835 MLVEPGSSWTSKNEGTQICVTPGSFDASMERNESLDVDFTDAPEPDMAR 883


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 3   PILQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGI 122
           P  Q+P  +  P+ +  S +  P    TS+R T   DEGI
Sbjct: 71  PSPQAPTHIGQPLIALKSHAFEPVKAHTSIRSTAEIDEGI 110


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 18  PGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPKL 173
           PG + DP  S   ++  PTS       +PS  +G  +  S   P  V+PP L
Sbjct: 757 PGKMYDPSESPAGMTPPPTS------TSPSGWQGRGRYPSQPSPTDVLPPTL 802


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 9   LQSPGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQIT 134
           L  P S SDP+ ++ + +  P+    S   TPS D    ++T
Sbjct: 258 LTPPASPSDPVTTDATKAPVPSKPPLSPFMTPSPDTATEKVT 299


>SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)
          Length = 558

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 27  LSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSP-DLPRQVVPP 167
           L   ++S LS +   +S   SLRDTP +    +++ +P  LP    PP
Sbjct: 201 LDGSVSSNLSDTTVKSSLAESLRDTPRSSFSDNRVLTPTSLPLPPTPP 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,771
Number of Sequences: 59808
Number of extensions: 211690
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)