Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0135.Seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical
           protein B0353.1 protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 18  PGSLSDPINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVP 164
           P     P +S    S++PT  +TS       D G  Q   PD     VP
Sbjct: 44  PSPFLSPSSSSSQTSISPTPTETSSNYRSLVDSGDYQSILPDFDPSFVP 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,709
Number of Sequences: 27780
Number of extensions: 156023
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)