Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0135.Seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    34   0.089
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    32   0.27 
At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ...    29   1.9  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    29   2.5  

>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 36  PINSELSLSVTPTSDDTSLRDTPSTDEGISQITSPDLPRQVVPPK 170
           P N+E      PTS     RD P TD+  +Q   P  P++ VPPK
Sbjct: 8   PENAEAPQKHKPTSSKRKKRDNP-TDQTQTQKHKPQKPKKAVPPK 51


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 181 EYVNLGGTTCLGKSGLVICEIPSSVEGVSLNEVSSLVG 68
           E V  G TTC+G SG +  E+ S++EG  +   + L G
Sbjct: 598 EIVGYGCTTCIGNSGNLDPEVASAIEGTDIIPAAVLSG 635


>At3g06550.1 68416.m00761 O-acetyltransferase-related similar to
           O-acetyltransferase (GI:17063556) [Cryptococcus
           neoformans var. neoformans]; contains 7 transmembrane
           domains
          Length = 419

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 177 MSI*VVRLVLVNQGWLFVKYLHQLREYLSMRYRHLSASQIETAQN 43
           MS+ V  +V V   WL+ +YLH  +  +S + RH   + +E A++
Sbjct: 12  MSV-VFGIVPVIVAWLYSEYLHYAKYSVSAKTRHSDVNLVEIAKD 55


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 24  SLSDPI-NSELSLSVTPTSDDTSLRDTPST 110
           ++S P+ NS +S + T TSDD+SL   PST
Sbjct: 510 NISHPLTNSSVSHNFTLTSDDSSLHTQPST 539


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,119
Number of Sequences: 28952
Number of extensions: 142029
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)