Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0134.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 119  PYAFIFD*TKPFERYTL 69
            PYA + D  KP  RYT+
Sbjct: 964  PYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 119  PYAFIFD*TKPFERYTL 69
            PYA + D  KP  RYT+
Sbjct: 960  PYAALIDELKPATRYTI 976


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -3

Query: 233 VIKSKKXQYTVLLISLNYIRRCCTNKSSLN 144
           +++++   Y + ++ LN+ ++  T  SS+N
Sbjct: 205 LVETEPIYYNLTMVKLNWPKKRVTKMSSIN 234


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  FFYWKVKYRIKTKTRVVN 63
           FFYW++     + T+ +N
Sbjct: 265 FFYWRIYNAAVSTTKAIN 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,895
Number of Sequences: 438
Number of extensions: 1142
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)