Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0132.Seq
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         33   0.12 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   1.9  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.5  
03_05_0180 + 21593763-21594605                                         28   4.4  
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867...    28   4.4  
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042     28   5.8  
10_08_0996 - 22112020-22112859                                         27   7.7  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    27   7.7  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   7.7  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 154 SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQRERELGLDRRETG 294
           SQAF A LL D + +A+P++  Q  P+    T + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPETET-ETEEEPPRQRRRTG 274


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 365 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 463
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 200
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>03_05_0180 + 21593763-21594605
          Length = 280

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 154 SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQRERELGLDRRETG 294
           SQAF A LL D + +A P++     P+      ++++E    RR TG
Sbjct: 229 SQAFSAVLLADANRAASPVVVVHKRPTPET-EKEQDQEPPRQRRRTG 274


>03_05_0179 - 21583234-21584336,21586274-21586358,21586665-21586713,
            21586801-21586874,21586958-21587050,21587120-21587174,
            21587348-21587421,21587702-21587814,21587911-21588168,
            21588915-21589012,21589139-21589256,21589754-21589848,
            21590001-21590159,21590336-21590525,21590881-21591021,
            21591142-21591176,21591659-21591699
          Length = 926

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 154  SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQRERELGLDRRETG 294
            SQAF A LL D + +A P++     P+      ++++E    RR TG
Sbjct: 875  SQAFSAVLLADANRAASPVVVVHKRPTPET-EKEQDQEPPRQRRRTG 920


>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
          Length = 268

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 371 LVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVTLLVA 538
           L H L  AAGGA+    G  +N S    S+   G   L V     G +N +T  +A
Sbjct: 136 LAHPLLLAAGGARGGGGGCVVNISSVAGSV---GMPALAVYSMTKGGMNQLTRSLA 188


>10_08_0996 - 22112020-22112859
          Length = 279

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 154 SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQRERELGLDRRETG 294
           +QAF A LL D + +A P++  Q   +    T + E E    RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPETET-ETEEEPPRQRRRTG 270


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 216 EAKFAKRWIVHPSKGT*AGFRPS*DRLVLPY*WLVVAIVILL 341
           EA  A+   VHP+  T    R S DRL+ PY  L VA  +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 464 RLGWLRP*RRSGIIP 420
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,991
Number of Sequences: 37544
Number of extensions: 305969
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)