Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1KXH1 Cluster: Der f 13 allergen; n=1; Dermatophagoide...    38   0.14 
UniRef50_Q1M0X8 Cluster: MPA13 allergen; n=5; Neoptera|Rep: MPA1...    38   0.18 
UniRef50_Q96376 Cluster: S-linalool synthase; n=5; Onagraceae|Re...    32   8.9  

>UniRef50_A1KXH1 Cluster: Der f 13 allergen; n=1; Dermatophagoides
           farinae|Rep: Der f 13 allergen - Dermatophagoides
           farinae (House-dust mite)
          Length = 140

 Score = 38.3 bits (85), Expect = 0.14
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 488 QKAXDG-LEVTYVREFGPEEMKAVMTAKDVTCTRVYK 381
           Q   DG +E+ Y+REF  E++K    A DV C RVY+
Sbjct: 100 QTQRDGDMEIKYIREFNGEQIKVTSIANDVKCLRVYQ 136


>UniRef50_Q1M0X8 Cluster: MPA13 allergen; n=5; Neoptera|Rep: MPA13
           allergen - Periplaneta americana (American cockroach)
          Length = 131

 Score = 37.9 bits (84), Expect = 0.18
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 467 EVTYVREFGPEEMKAVMTAKDVTCTRVYK 381
           E T +R+F  +E+K  +T  D+ CTR+YK
Sbjct: 101 ETTIIRDFSNDEIKMTLTVDDIVCTRIYK 129


>UniRef50_Q96376 Cluster: S-linalool synthase; n=5; Onagraceae|Rep:
           S-linalool synthase - Clarkia breweri
          Length = 870

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 8   IHTKKNTFI*YAMENIECDLPED-QNVNFGLI*TINVFLNTINASRTSAPLLL 163
           I+ KK  FI   + +  C+LP+  + ++F  +   N+F N+ N   T   LLL
Sbjct: 729 INVKKQEFIQRVLSDQHCNLPKSFKQLHFSCLKVFNMFFNSSNIFDTDTDLLL 781


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,869,571
Number of Sequences: 1657284
Number of extensions: 9725505
Number of successful extensions: 20403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20402
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)