Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   1.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.6  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    26   3.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   8.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.4  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 342 CRRFANIPRHNYVYLASILYI 280
           C +FA +PR NY  L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 71  EDQNVNFG--LI*TINVFLNT-INASRTSAPLLLPWSLNLF*FRHRHSLLQFERQT 229
           E++N  F    +   ++ +N+ + A+ ++  LLL W L+   FR+RH LL     T
Sbjct: 322 ENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLAT 377


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 378 PVKGLYSEVGSRCRRFANIP 319
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 397 APESTRSSKRTLLRGRESVPPIREHPAAQ 311
           AP++T SS   L + ++S+P   EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  NVNFGLI*TINVFLNTINASRTSA 151
           N    L  T+N F+N +N+S TSA
Sbjct: 453 NTTLSLNSTLNTFMNELNSSMTSA 476


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 360 SEVGSRCRRFANIPRHNYVYLASILYISPF*LFCKIILVF 241
           SE+ ++ RR     +H Y+YLA  L+     L C II  F
Sbjct: 52  SEIEAKKRRRK---KHRYIYLAVCLFFLASVLSCAIIFRF 88


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 427 FISSGPNSLT*VTSRPSXAF*SDYTLRTQP-EPSFKRREVHVPGGT 561
           F  +GPN+    T+ PS    S  +L+ QP  PS+  R    P GT
Sbjct: 348 FAQNGPNTSLLPTAMPSDVSISS-SLQQQPIHPSYDSRFSKAPQGT 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,958
Number of Sequences: 5004
Number of extensions: 40736
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)