Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0130.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 29 3.7
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 28 4.9
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 4.9
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 4.9
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 4.9
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 28 4.9
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 27 8.6
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 443 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 321
G + ++ M AKD T +V +V KD S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 464 LQDRRXPSDQIIH*GLSLNLPSSVERSMFXAVLXNASRH 580
++D R PS + G S+N R F AV+ N RH
Sbjct: 577 IEDGRAPSASHLEDGNSINRSVCTRRDAFKAVVINVCRH 615
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 91 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 177
W+N +KRI E NK+ K+ A+ T K
Sbjct: 239 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 267
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 91 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 177
W+N +KRI E NK+ K+ A+ T K
Sbjct: 239 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 267
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 397 APESTRSSKRTLLRGRESVPPIREHPAAQLCLFSIYSIH 281
AP +TR + + +E+ P RE PA + C S+H
Sbjct: 77 APRATRKGRPASDKKKEAGTPARERPAGKWCSVHNTSLH 115
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 91 WLNINNKRIFEYNKRFAHKRPAVVTVVAK 177
W+N +KRI E NK+ K+ A+ T K
Sbjct: 236 WMNEKSKRISEQNKKNCQKKKAIHTAGTK 264
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 381 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 482
L+D+ +HL +FPDV FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,815
Number of Sequences: 37544
Number of extensions: 271866
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -