Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)                 29   3.8  
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)           28   5.0  

>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
          Length = 437

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 318 AGCSRIGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAE 446
           AG +R+GG D   R    LL L+    +  L+C      LR E
Sbjct: 252 AGNNRLGGQDFNARFMQYLLQLIHKRFNRQLTCSEDIQRLRQE 294


>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
          Length = 1019

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 161 LPWSLNLF*FRHRHSLLQFER-QTMTDVKTKII 256
           LPW+++   FR +HSLL   R  +  DVK K I
Sbjct: 275 LPWAISHGKFRDKHSLLHTLRDNSSNDVKEKFI 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,997,750
Number of Sequences: 59808
Number of extensions: 311377
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)