Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S74445-1|AAB20773.1|  137|Homo sapiens cellular retinoic acid-bi...    29   9.5  
CR457017-1|CAG33298.1|  137|Homo sapiens CRABP1 protein.               29   9.5  
BC045758-1|AAH45758.1|  474|Homo sapiens NIMA (never in mitosis ...    29   9.5  
AK098832-1|BAC05427.1|  404|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AK057247-1|BAB71395.1|  484|Homo sapiens protein ( Homo sapiens ...    29   9.5  

>S74445-1|AAB20773.1|  137|Homo sapiens cellular retinoic
           acid-binding protein protein.
          Length = 137

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 476 DGLEVTYVREFGPEEMKAVMTAKDVTCTRVY 384
           DG +  + RE   +E+     A DV CTR+Y
Sbjct: 104 DGPKTYWTRELANDELILTFGADDVVCTRIY 134


>CR457017-1|CAG33298.1|  137|Homo sapiens CRABP1 protein.
          Length = 137

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 476 DGLEVTYVREFGPEEMKAVMTAKDVTCTRVY 384
           DG +  + RE   +E+     A DV CTR+Y
Sbjct: 104 DGPKTYWTRELANDELILTFGADDVVCTRIY 134


>BC045758-1|AAH45758.1|  474|Homo sapiens NIMA (never in mitosis
           gene a)- related kinase 10 protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 GGTDSRPRSRVLLLDLVDSGASHVLSCH 419
           GGT SRPR  +L LDL+     H+L  H
Sbjct: 260 GGTGSRPRPALLPLDLLLKVPPHMLRAH 287


>AK098832-1|BAC05427.1|  404|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25966 fis, clone TST05207. ).
          Length = 404

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 GGTDSRPRSRVLLLDLVDSGASHVLSCH 419
           GGT SRPR  +L LDL+     H+L  H
Sbjct: 345 GGTGSRPRPALLPLDLLLKVPPHMLRAH 372


>AK057247-1|BAB71395.1|  484|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32685 fis, clone TESTI2000154, weakly similar to
           PUTATIVE SERINE/THREONINE-PROTEIN KINASE D1044.3 IN
           CHROMOSOME ).
          Length = 484

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 336 GGTDSRPRSRVLLLDLVDSGASHVLSCH 419
           GGT SRPR  +L LDL+     H+L  H
Sbjct: 260 GGTGSRPRPALLPLDLLLKVPPHMLRAH 287


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,800,522
Number of Sequences: 237096
Number of extensions: 1446459
Number of successful extensions: 2384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2384
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)