Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    31   0.82 
U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 318 RHNYVYLASILYISPF*LFCKIILVFTSVIVCRSNCKSEWR 196
           +H++  L+ I +I    LF + +LVF   ++C SN   EWR
Sbjct: 369 QHSHFVLSQIQFIKCLSLFIEPLLVF---LICTSNTLEEWR 406


>U23179-1|AAY55860.1|  334|Caenorhabditis elegans Hypothetical
           protein C27D6.11 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = -3

Query: 590 RLANDGLHCXVPPGTWTSRRLKEGSG*VLNV*SDQKAXDGLEVTYVREFGPEEMKAVMTA 411
           ++   G +  V   TW  ++L E +  V+N+ S ++  D     Y+++F P E + V   
Sbjct: 43  KILGSGSYSRVARATWGDKKL-EVAAKVINITSTREKDD-----YIKKFLPREKEIVKLL 96

Query: 410 KDVTCTRVYKV 378
           K     R+Y++
Sbjct: 97  KHDNICRLYEM 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,802
Number of Sequences: 27780
Number of extensions: 235277
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)