Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    42   5e-06
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.32 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.3  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 467 EVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ 375
           + T  REF   EMKA+M   D+ CTRVYK+Q
Sbjct: 101 QTTIEREFSSTEMKAIMKVDDIICTRVYKIQ 131


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 321 GCSRIGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 476
           GC          RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 13  GCDEQTSRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 135 AFIVFKNTFIVYIKPKLTF 79
           AFI +   F +Y++P  TF
Sbjct: 126 AFISYGTLFFIYVQPSATF 144


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 135 AFIVFKNTFIVYIKPKLTF 79
           AFI +   F +Y+ P  TF
Sbjct: 127 AFISYGTLFFIYVHPSATF 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,581
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)