Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0130.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    27   9.5  
At1g14160.1 68414.m01674 integral membrane family protein locati...    27   9.5  

>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 282 CIE*MLNKHN-CAAGCSRIGGTDSRPRS-RVLLLDLVDS 392
           CI+ + N H+ C +GC R+      PRS ++L  D  DS
Sbjct: 779 CIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDS 817


>At1g14160.1 68414.m01674 integral membrane family protein location
           of EST 168K9XP 3', gb|AA651045; contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 209

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 27  HLFNTQWKTSSAIFLKIKTLTLA 95
           H+F+TQ KTS  I L + T+ LA
Sbjct: 120 HIFSTQAKTSRIILLVVDTVMLA 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,730,388
Number of Sequences: 28952
Number of extensions: 213826
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)