Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0129.Seq
         (419 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    54   1e-06
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    31   7.2  
UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family wit...    31   9.5  
UniRef50_UPI0000E2181D Cluster: PREDICTED: rho guanine nucleotid...    31   9.5  
UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;...    31   9.5  
UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY0581...    31   9.5  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 54.0 bits (124), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -1

Query: 257  KICLCFENIFDIPYHLRKNIGV 192
            KICLCFENIFDIPYHLRKNIGV
Sbjct: 1165 KICLCFENIFDIPYHLRKNIGV 1186


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFE 242
           L H +  +K  +V LN D + E V+NI++VFE
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFE 180


>UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family with
           sequence similarity 48, member A; n=2; Equus
           caballus|Rep: PREDICTED: similar to family with sequence
           similarity 48, member A - Equus caballus
          Length = 953

 Score = 31.1 bits (67), Expect = 9.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 417 PIPPQARPGQAQPLQAVLLPRAV-QVHRTLPPLXLVFPGVII 295
           P+P   RPGQ+ PLQ V L  A+ Q+ + +  L ++ P V +
Sbjct: 707 PVPALQRPGQSLPLQRVQLSSALQQLQQQIQHLRILQPPVAV 748


>UniRef50_UPI0000E2181D Cluster: PREDICTED: rho guanine nucleotide
            exchange factor 5; n=5; Eutheria|Rep: PREDICTED: rho
            guanine nucleotide exchange factor 5 - Pan troglodytes
          Length = 1754

 Score = 31.1 bits (67), Expect = 9.5
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 417  PIPPQARPGQAQP-LQAVLLPRAVQVHRTLPPLXLVFP 307
            P+PP   P   QP L ++  P + +++R LPPL +++P
Sbjct: 969  PLPPT--PDLPQPHLPSISAPGSSRIYRPLPPLPIIYP 1004


>UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;
           n=1; Chlorella virus AR158|Rep: Putative uncharacterized
           protein c530R - Chlorella virus AR158
          Length = 79

 Score = 31.1 bits (67), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 419 HRFHLKHVRGKXNHFRQFFYLGRFKYIGRFLH 324
           H  H +H R    HFR F + G F++ G F H
Sbjct: 13  HFRHFRHFR-HFRHFRHFRHFGHFRHFGHFGH 43


>UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY05815;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05815 - Plasmodium yoelii yoelii
          Length = 1012

 Score = 31.1 bits (67), Expect = 9.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 60  RGFLCMLIKVKQRESYR*NRSKSLSKI*NLKHYKEYSKSCLVVLNTD-ILTEMVRNIEYV 236
           +GF   ++  +    Y    ++ LSK  NLK+ K+Y    L++LN D  + E V++  Y 
Sbjct: 458 KGFDVSIVSAQDYMKYSGYDNELLSKYYNLKNEKDY--IFLIILNKDFFIDEFVKSQNYS 515

Query: 237 FEAKAYF 257
              + YF
Sbjct: 516 ISKQNYF 522


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,946,444
Number of Sequences: 1657284
Number of extensions: 7008127
Number of successful extensions: 14127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14110
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)