Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0128.Seq
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.6  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.3  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 96   GTQGFNVV*AFSGHDFSNKLLLAARAIR 13
            G Q  N++  +  H+FSN+ LL  + IR
Sbjct: 2301 GCQFENIICPYFNHEFSNEQLLQQKFIR 2328


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 238 IASASYSTFGNGHAFSLRVEEVSRITVAGCDEXRHATGVF 119
           I S S S FG+G AF L  E      V G  +  +  G+F
Sbjct: 92  INSESTSLFGDGLAFFLAAERAKPGPVFGFTDKFNGYGIF 131


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  HDIEPLRADLCRPGIETHQLRDGFHRN 153
           H   PLR  +C PG +T Q+     RN
Sbjct: 810 HPTHPLRVTVCLPGSKTIQVARRSFRN 836


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 SSQPATVILDTSSTRRENACPLP 212
           S  PATV++ T+S     +CP P
Sbjct: 169 SCNPATVLIVTTSGSTSTSCPPP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,141
Number of Sequences: 5004
Number of extensions: 28690
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)