Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0128.Seq
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      35   0.028
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   31   0.46 
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.61 
SB_14665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   5.6  
SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 27   5.6  
SB_11820| Best HMM Match : EGF_2 (HMM E-Value=9.8)                     27   5.6  
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)              27   5.6  
SB_35113| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   9.9  

>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 56  CPENAHTTLNPCVPT--CADPEL---KHTSCVTXFIATCHCDSGYLFNSEG 193
           CP+   +  N CV    CADP++   +H    T     C C  GY+ NS+G
Sbjct: 691 CPQGYRSDWNKCVDIDECADPQVNKCQHICNNTQASFHCECREGYILNSDG 741


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 53  SCPENA--HTTLNPCVPTCADPELKHTSCVTXFIATCHCDSGYL--FNSEGK 196
           +CPENA      + C  TC DP  ++ +C    +  C C   ++   N+ GK
Sbjct: 179 TCPENAVFKYCTSACPETCHDPPGRNKTCSMRCVEGCECKEEFVQRVNAVGK 230


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 152 TCHCDSGYLFNSEGKCVPVAE 214
           TC C  GY  NS+GKC  V E
Sbjct: 26  TCQCAEGYERNSQGKCADVNE 46


>SB_14665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +3

Query: 273 VYLTXTKLYLRP*NLYLKAHFTL*MAXGSSXYLTPSGLLARP 398
           +YLT T LYL P  LYL    T      +  YLTP+GL   P
Sbjct: 2   LYLTPTWLYLTPTWLYLTP--TGLYLTPTGLYLTPTGLYLTP 41


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 152 TCHCDSGYLFNSEGKCVPVAE 214
           TC C  GY  +S+GKC  V E
Sbjct: 483 TCQCAEGYERDSQGKCADVNE 503


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 149 ATCHCDSGYLFNSEGK---CVPVAE 214
           A C C +GY  N+EGK   CV V E
Sbjct: 60  ARCECVAGYALNTEGKITRCVDVNE 84


>SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 ATCHCDSGYLFNSEGKCVPVAE 214
           +T   D GYLF S G+ +PV++
Sbjct: 584 STLESDEGYLFGSNGQILPVSQ 605


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 11   SLMALAAS-KSLFEKSCPENAHTTLNPCVPTCADPELKHTSCVTXFIATCHCDSGYLFN 184
            SL  +A S +S    +   NA  T+  C  TC +    H  CV     TC CD  +  N
Sbjct: 1317 SLRVVAMSVESTNGDTATSNATITITTCTYTCENNCSNHGQCVAR--DTCVCDQKFSGN 1373


>SB_11820| Best HMM Match : EGF_2 (HMM E-Value=9.8)
          Length = 197

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 ATCHCDSGYLFNSEGKCVPVAE 214
           +T   D GYLF S G+ +PV++
Sbjct: 47  STLESDEGYLFGSNGQILPVSQ 68


>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
          Length = 748

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  SKSLFEKSCPENAHTTLNPCVPTCADPELKHTSC 133
           S +L  KS PEN+ T       TC DPE  + +C
Sbjct: 656 SITLTNKSIPENSPTGTLVGTLTCEDPESPNDTC 689


>SB_35113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 273 VYLTXTKLYLRP*NLYLKAHFTL*MAXGSSXYLTPSGLLARP 398
           +YL+ T LY+ P  LYL A   L ++  +  YLTP+GL   P
Sbjct: 2   LYLSLTGLYMSPTGLYL-APTGLYLSP-TWLYLTPTGLYLTP 41


>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 80  LNPCVPTCADPELKHTSCVTXFIA-TCHCDSGYLFNS-EGKCVPVAE 214
           ++ C+   + PE  H+ C       TC C+SGYL +  +  C+ V E
Sbjct: 285 MDECLVPGSCPE--HSVCTNHVKGFTCECESGYLMDDLKAHCIDVDE 329


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 56  CPENAHTTLNPCVPTCADPELKHTSC---VTXFIATCHCDS 169
           C +N H   N C   C    ++H +C    +  + +CH DS
Sbjct: 306 CGQNEHEYSNCCERACQSDIVRHANCSRNCSNSLDSCHRDS 346


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 77   TLNPCVPTCADPELKHTSCVTXFIATCHCDSGYLFNSEGKCV 202
            T+NPCV    +    HT  V      C C  GY   +  +CV
Sbjct: 2124 TVNPCV---LNGGCTHTCTVLDGKPVCSCPQGYRLENPYRCV 2162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,891,295
Number of Sequences: 59808
Number of extensions: 242085
Number of successful extensions: 594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)