Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0128.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.39 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    25   0.39 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.91 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.5  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 131 CVTXFIATCHCDSGYLFNSEGKCVP 205
           C+      C C  GYL N +  CVP
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVP 87


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 131 CVTXFIATCHCDSGYLFNSEGKCVP 205
           C+      C C  GYL N +  CVP
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVP 87


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 256 NRISVEIASASYSTFGNGHAFSLRVEEVSR 167
           NR  V  A+  Y T   G A ++ +++VSR
Sbjct: 335 NRSPVRPATVQYDTCCQGRATAIYIDKVSR 364


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 164 DSGYLFNSEGK 196
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 164 DSGYLFNSEGK 196
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -3

Query: 178 EVSRITVAGCDEXRHATGVFQFRVCTGRHAGVQC 77
           + S  +   CDE R +      +VC  R     C
Sbjct: 322 QASSCSCLDCDEIRESLDTQFLQVCRSRRHSDSC 355


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 5   LVSLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELKHTSCV 136
           + S++A AAS +L +   PE+   T      T   P +   S V
Sbjct: 20  IASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAV 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,848
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)