Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0126.Seq
         (528 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M97933-1|AAA28566.1|  569|Drosophila melanogaster germ cell-less...    28   6.8  
AY061319-1|AAL28867.1|  569|Drosophila melanogaster LD23660p pro...    28   6.8  
AE013599-707|AAF59048.1|  569|Drosophila melanogaster CG8411-PA ...    28   6.8  

>M97933-1|AAA28566.1|  569|Drosophila melanogaster germ cell-less
           protein protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  KLYTQYLQKHYYCIDLCTYVN*NKNPETLLFRSI*KH 209
           KL TQYL  HY  +DL    N N  P+  L+R I  H
Sbjct: 313 KLRTQYLTNHY--MDLKIIYNDNIIPKEWLYRHIHNH 347


>AY061319-1|AAL28867.1|  569|Drosophila melanogaster LD23660p
           protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  KLYTQYLQKHYYCIDLCTYVN*NKNPETLLFRSI*KH 209
           KL TQYL  HY  +DL    N N  P+  L+R I  H
Sbjct: 313 KLRTQYLTNHY--MDLKIIYNDNIIPKEWLYRHIHNH 347


>AE013599-707|AAF59048.1|  569|Drosophila melanogaster CG8411-PA
           protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  KLYTQYLQKHYYCIDLCTYVN*NKNPETLLFRSI*KH 209
           KL TQYL  HY  +DL    N N  P+  L+R I  H
Sbjct: 313 KLRTQYLTNHY--MDLKIIYNDNIIPKEWLYRHIHNH 347


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,765
Number of Sequences: 53049
Number of extensions: 216578
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)