Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ...    83   4e-15
UniRef50_Q00341 Cluster: Vigilin; n=84; Coelomata|Rep: Vigilin -...    81   1e-14
UniRef50_Q4TC04 Cluster: Chromosome undetermined SCAF7065, whole...    74   3e-12
UniRef50_A7SFJ6 Cluster: Predicted protein; n=1; Nematostella ve...    61   2e-08
UniRef50_Q5C218 Cluster: SJCHGC07141 protein; n=1; Schistosoma j...    44   0.004
UniRef50_A2ANE9 Cluster: Novel gene coding for a KH domain conta...    39   0.10 
UniRef50_Q17832 Cluster: Putative uncharacterized protein; n=2; ...    37   0.31 
UniRef50_Q4Z5M6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
           n=9; Endopterygota|Rep: Drosophila dodeca-satellite
           protein 1 - Drosophila melanogaster (Fruit fly)
          Length = 1301

 Score = 83.4 bits (197), Expect = 4e-15
 Identities = 44/81 (54%), Positives = 53/81 (65%)
 Frame = +2

Query: 296 RVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXLI 475
           RV SS  T + HVP +ERK   +  FGEGES R C  ITK+TGA IEI + K+ SLT LI
Sbjct: 88  RVTSSQKTHIVHVPCKERKSTESEKFGEGESKRICQQITKETGAQIEIVSGKNQSLTFLI 147

Query: 476 TGKQSAVLEARDKF*PIFSNR 538
            GKQS +L+AR K    FS +
Sbjct: 148 KGKQSELLDARRKILMGFSTQ 168


>UniRef50_Q00341 Cluster: Vigilin; n=84; Coelomata|Rep: Vigilin -
           Homo sapiens (Human)
          Length = 1268

 Score = 81.4 bits (192), Expect = 1e-14
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +2

Query: 287 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 463
           NK+R + +S+ TQVFHVP EERK  + N FGEGE  + C  I + TGAH+E+S +KD  L
Sbjct: 66  NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125

Query: 464 TXLITGKQSAVLEAR 508
           + +++GK  AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140


>UniRef50_Q4TC04 Cluster: Chromosome undetermined SCAF7065, whole
           genome shotgun sequence; n=5; Euteleostomi|Rep:
           Chromosome undetermined SCAF7065, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1399

 Score = 73.7 bits (173), Expect = 3e-12
 Identities = 32/63 (50%), Positives = 45/63 (71%)
 Frame = +2

Query: 320 QVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXLITGKQSAVL 499
           QVFHVP EER+  + + FGEGE  + C  I + TGAHIE+S +KD  L+ ++TGK  +V+
Sbjct: 130 QVFHVPLEERRYKDNSQFGEGEEAKVCLDIMQRTGAHIELSLAKDQGLSIMVTGKHDSVM 189

Query: 500 EAR 508
           +AR
Sbjct: 190 KAR 192


>UniRef50_A7SFJ6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1175

 Score = 60.9 bits (141), Expect = 2e-08
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = +2

Query: 299 VGSSLHTQVFHVPYEER--KLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXL 472
           + S+  TQVF VP EER  KL +  TFG+      C  I   TGA IE+S  KD SLT +
Sbjct: 50  IRSTTVTQVFRVPLEERRYKLFHEATFGDERQHSICRDIMAKTGASIEVSLGKDLSLTIM 109

Query: 473 ITGKQSAVLEAR 508
           +TGK   V +AR
Sbjct: 110 VTGKPDTVAKAR 121


>UniRef50_Q5C218 Cluster: SJCHGC07141 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07141 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 212

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
 Frame = +2

Query: 317 TQVFHVPYEERK-LDNAN---TFGEGESLRT--CHSITKDTGAHIEISTSKDGSLTXLIT 478
           T+V  +P+EER+ L+N N   + G+  ++++  C  I KDT   + +++SK+  LT +++
Sbjct: 50  TEVLEIPFEERRFLNNENDNLSAGKRYNVQSKICMEIAKDTNVKMNLNSSKNHILTVIVS 109

Query: 479 GKQSAVLEAR 508
           G+ S V EA+
Sbjct: 110 GEPSRVAEAK 119


>UniRef50_A2ANE9 Cluster: Novel gene coding for a KH domain
           containing protein; n=11; Murinae|Rep: Novel gene coding
           for a KH domain containing protein - Mus musculus
           (Mouse)
          Length = 1250

 Score = 38.7 bits (86), Expect = 0.10
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +2

Query: 317 TQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXLITGKQSAV 496
           T++FHV  EE K      FGEG   +    I ++TG ++E S  KD  L   + G   AV
Sbjct: 71  TRIFHVLLEEEKY--LTQFGEGTLAKFYAHIMENTGVNLESSFVKDQGLYVTVFGNPEAV 128

Query: 497 LEARDK 514
             A ++
Sbjct: 129 TNAENE 134


>UniRef50_Q17832 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 1220

 Score = 37.1 bits (82), Expect = 0.31
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 FHVPYEERKLDNANTFGE-GESLRTCHSITKDTGAHIEISTSKDGSLTXLITGKQSAVLE 502
           F +  +ER  +   +FG   E  +   +I   T   IE+S SKDG LT ++ G+++   E
Sbjct: 65  FRLASDERS-NKVKSFGSTSEESKKAQAIATATKTRIELSESKDGELTVVVKGERAKAEE 123

Query: 503 AR 508
           AR
Sbjct: 124 AR 125


>UniRef50_Q4Z5M6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 879

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 263 QRNIXQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIE 436
           ++NI     K+++  + HTQV+H   + +  D  NT+ E  +L+  +   +  G  +E
Sbjct: 590 KKNILNNNKKIKINKNDHTQVYHDLVDTQGNDTLNTYHEIANLKNEYMARESDGLLLE 647


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,856,410
Number of Sequences: 1657284
Number of extensions: 9547866
Number of successful extensions: 21305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21297
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)