Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.9  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 281 ATNKLRVGSSLHTQVFHVPYEERKLDNANTFG 376
           +T+   VG+ +H Q  H  Y    + ++ TFG
Sbjct: 187 STSSQPVGTQIHQQTNHTFYPWMAIADSMTFG 218


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 290  KLRVGSSLHTQVFHVPYEERKLDNANTFGEGES 388
            KL +G  ++ Q F +    +   NA T+G GE+
Sbjct: 2060 KLVMGMPMYGQSFSLADNNQNGLNAATYGGGEA 2092


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 402 WQVLKDSPSP 373
           W+V +DSPSP
Sbjct: 109 WKVEEDSPSP 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,631
Number of Sequences: 336
Number of extensions: 2455
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)