Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   2.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.4  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 217 PTMTYFQHCRIPSPCATXYTXGYKQTSSWLFTAHSSFPC 333
           P +TY   C + S   +      K       +AH++FPC
Sbjct: 348 PAVTYLMACLLESHFMSIRKGALKAMRKAFMSAHANFPC 386


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 329 HVPYEERKLDNANTFGEGESLRTC 400
           HVPY + KL     F  G + RTC
Sbjct: 338 HVPYRDSKLTRLLKFSLGGNCRTC 361


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 424 SAHRNIYQQRWQSNFXYHWKAERCSRSAGQILTHFQQQASKQI 552
           +AHR ++QQ   SNF Y +       S+ + + + QQ  +K I
Sbjct: 837 NAHRPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPI 879


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 425 LLYP*LWNGKFLRILPHR 372
           LLYP  W G ++ +LP R
Sbjct: 505 LLYPLTWQGLYIPVLPRR 522


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 173  QXAWXHQDERVSHLQPSWIADASFLSPPAVLVR 75
            Q  W   D R  HL PSW+  +    PP ++ +
Sbjct: 947  QYLWFEADRR--HLFPSWVKPSDSEPPPLLVYK 977


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 338  YEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXLITGKQ 487
            +EE + DN N + E    R  H +    GA   I +   G L  +  GK+
Sbjct: 1185 FEEMETDNVNPYSESARERNKHPVA-ILGAREYIFSENIGILGDVAAGKE 1233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,239
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)