Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    29   2.1  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    28   6.5  
06_02_0126 + 12130409-12130532,12131015-12131373                       27   8.6  

>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 432 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 331
           M  PVS   + + L+D+ SP  + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 VLKDSPSPKVLALSSFRSSYGTWK 325
           + KD P P V   SSF + +G W+
Sbjct: 645 IQKDVPYPAVFVTSSFNTRFGVWE 668


>06_02_0126 + 12130409-12130532,12131015-12131373
          Length = 160

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 239 IAAFPALVQRNIXQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEG 382
           +AA   L + N  Q  +    G ++  +V HVP +E+   + + +G G
Sbjct: 23  VAAARELTEANGLQLLSDSSKGKNMEPEVVHVPQDEKIAYHGDGYGHG 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,740,949
Number of Sequences: 37544
Number of extensions: 274172
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)