Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        61   8e-10
SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = +2

Query: 299 VGSSLHTQVFHVPYEER--KLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTXL 472
           + S+  TQVF VP EER  KL +  TFG+      C  I   TGA IE+S  KD SLT +
Sbjct: 113 IRSTTVTQVFRVPLEERRYKLFHEATFGDERQHSICRDIMAKTGASIEVSLGKDLSLTIM 172

Query: 473 ITGKQSAVLEAR 508
           +TGK   V +AR
Sbjct: 173 VTGKPDTVAKAR 184


>SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 323 VFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLT 466
           VF V + E++  N+ TFG+    R C    KD+ A     TSK   LT
Sbjct: 33  VFSVKFHEKR-SNSTTFGQIPPSRQCTDAMKDSLASALRHTSKQAQLT 79


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 263 QRNIXQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIE-I 439
           +RN    T    V    HT  FH P +ER    A T       R  H   K  GA I+ +
Sbjct: 435 KRNTCGVTRNPVVALIKHT-TFHFPSQERSTKKAKTATAKNHERAWHRY-KPNGAEIKAL 492

Query: 440 STSKDGSLTXLITGKQS 490
           ++   GS   L+   +S
Sbjct: 493 NSIPQGSQNMLLVDSES 509


>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 130 NHHGLLMHHFCLLRQSLSAPSRYSXKXLYXIKLKDYAVNARIV 2
           NH   L+ HFCL+  SL   S+ +      + + D ++  +IV
Sbjct: 163 NHAEKLLQHFCLMFSSLYPASKETINIHSLVNICDDSIELQIV 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,963,854
Number of Sequences: 59808
Number of extensions: 324607
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)