Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ...    81   2e-15
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei...    81   2e-15
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.              81   2e-15

>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
           binding protein protein.
          Length = 1268

 Score = 81.4 bits (192), Expect = 2e-15
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +2

Query: 287 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 463
           NK+R + +S+ TQVFHVP EERK  + N FGEGE  + C  I + TGAH+E+S +KD  L
Sbjct: 66  NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125

Query: 464 TXLITGKQSAVLEAR 508
           + +++GK  AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 481 KAERCSRSAGQILTHFQQQASKQISXPXEHYRWXLRKQG 597
           K +   ++   I+   Q QAS  ++ P EH+R+ + K G
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNG 170


>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
           binding protein (vigilin) protein.
          Length = 1268

 Score = 81.4 bits (192), Expect = 2e-15
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +2

Query: 287 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 463
           NK+R + +S+ TQVFHVP EERK  + N FGEGE  + C  I + TGAH+E+S +KD  L
Sbjct: 66  NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125

Query: 464 TXLITGKQSAVLEAR 508
           + +++GK  AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 481 KAERCSRSAGQILTHFQQQASKQISXPXEHYRWXLRKQG 597
           K +   ++   I+   Q QAS  ++ P EH+R+ + K G
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNG 170


>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
          Length = 1268

 Score = 81.4 bits (192), Expect = 2e-15
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +2

Query: 287 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 463
           NK+R + +S+ TQVFHVP EERK  + N FGEGE  + C  I + TGAH+E+S +KD  L
Sbjct: 66  NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125

Query: 464 TXLITGKQSAVLEAR 508
           + +++GK  AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 481 KAERCSRSAGQILTHFQQQASKQISXPXEHYRWXLRKQG 597
           K +   ++   I+   Q QAS  ++ P EH+R+ + K G
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNG 170


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,629,586
Number of Sequences: 237096
Number of extensions: 1514958
Number of successful extensions: 3213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3213
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)