Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    37   0.009
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    28   4.4  
Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 FHVPYEERKLDNANTFGE-GESLRTCHSITKDTGAHIEISTSKDGSLTXLITGKQSAVLE 502
           F +  +ER  +   +FG   E  +   +I   T   IE+S SKDG LT ++ G+++   E
Sbjct: 65  FRLASDERS-NKVKSFGSTSEESKKAQAIATATKTRIELSESKDGELTVVVKGERAKAEE 123

Query: 503 AR 508
           AR
Sbjct: 124 AR 125


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 460 TAIFAGRYFDVRSCILSYG--MASS*GFSLTESISIVKF 350
           T  F G+Y D+ S ++SYG     + GF +T    IV+F
Sbjct: 198 TKFFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQF 236


>Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical
           protein F59B2.3 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 311 LHTQVFHVPYEERKLDNAN-TFGEGESLRTC-HSITKDTGAHIEIS 442
           L TQ  HV   E KLD  N T G   S+  C   + K TG  IE +
Sbjct: 320 LGTQTIHVKGLEAKLDGTNTTAGSVASMPYCIRHLMKATGCPIEFA 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,407
Number of Sequences: 27780
Number of extensions: 237470
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)