Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 142 YHISNHHGLLMHHFCLLRQS 83
           YH+ NHH    +H  +L  S
Sbjct: 274 YHLDNHHVHHANHHAILGHS 293


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 417 SLVMEWQVLKDSPSPKVLALSSFRSSYGTWKT 322
           S+ + W    D  SP    +  ++ S G+W+T
Sbjct: 891 SVQLSWAAPYDGNSPIKRYVIEYKISKGSWET 922


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  LPEETKMMHQQSMMVGD 136
           +P++T+ + QQS   GD
Sbjct: 34  VPQQTQSVQQQSQQAGD 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,912
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)