Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0124.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.19 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   5.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 363 STPYGSVDRSSPPSLPSNRCGSRNRS--TTSLVPPLYTEVL 247
           S  Y S++ ++PP  P  R  S   +  T S +PPLY +++
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLV 760


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 341 STDPYGVLPLWGSNDLN 391
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 321 LPSNRCGSRNRSTTSLVPP 265
           LP++RC SR  S+ SLV P
Sbjct: 79  LPNSRCNSR-ESSDSLVQP 96


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 465 PPDNTVLAYKSLRMSRRTS*WSCMWSR 545
           PP N V+    + +S++T     MWS+
Sbjct: 270 PPQNLVINESIIDLSQQTYNVHLMWSK 296


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,897
Number of Sequences: 336
Number of extensions: 2981
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)