Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0124.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              175   2e-44
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   3e-44
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   3e-44
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         175   3e-44
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      174   3e-44
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   1e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                152   2e-37
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 64   7e-11
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  59   3e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)             32   0.36 
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.4  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  175 bits (426), Expect = 2e-44
 Identities = 81/85 (95%), Positives = 85/85 (100%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 262 DIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILA 321

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 322 SLSTFQQMWISKQEYDESGPAIVHR 346



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 249 HETTYNSIMKCDV 261


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  175 bits (425), Expect = 3e-44
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 251 DIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 310

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 311 SLSTFQQMWISKQEYDESGPAIVHR 335



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 238 HETTYNSIMKCDV 250


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  175 bits (425), Expect = 3e-44
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 276 HETTYNSIMKCDV 288


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  175 bits (425), Expect = 3e-44
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 275 HETTYNSIMKCDV 287


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  174 bits (424), Expect = 3e-44
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 276 HETTYNSIMKCDV 288


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  173 bits (420), Expect = 1e-43
 Identities = 81/85 (95%), Positives = 84/85 (98%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 275 HETTYNSIMKCDV 287


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  152 bits (368), Expect = 2e-37
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLY+N VLSGG+TM+PGIADRMQKEI  LA ++MK+K+IAPPERKYSVWIGGSILA
Sbjct: 62  DIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILA 121

Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
           SLSTFQQMWI+K+EY E GP IVHR
Sbjct: 122 SLSTFQQMWIAKEEYHEYGPPIVHR 146


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 16/98 (16%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIA 377
           D+R+ LY N VLSGG+TM+     R+Q++I                  + P  ++ ++I+
Sbjct: 237 DVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVIS 296

Query: 376 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 263
              ++Y+VW GGS+LAS   F  +  +K +YDE GPSI
Sbjct: 297 HHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSI 334


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSVWIGGS 338
           DIR  L+ + +++GG T+  G  +R+ +E+ +  P +M++K+I   +  E++++ WIGGS
Sbjct: 166 DIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGS 225

Query: 337 ILASL 323
           ILASL
Sbjct: 226 ILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = -2

Query: 529 LHHEVRRDIRKDLYANTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSV 353
           L   + R+I K LY   VL G T+         Q  +TA       KI+I  PP RK+ V
Sbjct: 313 LPSRLEREI-KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMV 371

Query: 352 WIGGSILAS-LSTFQQMWISKQEYDESG 272
           ++GG++LA  +      W++++EY+E G
Sbjct: 372 FMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYS 356
           D RK L  N VL GGT M PG   R+ +EI  L  S           +K+  PP     +
Sbjct: 72  DTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANIT 131

Query: 355 VWIGGSILASLSTFQQMWISKQEYDE 278
            W+GG+I  SL        +++ Y +
Sbjct: 132 AWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPG 446
           D+R+ LY+N VLSGG+T++ G
Sbjct: 271 DLRRVLYSNIVLSGGSTLFKG 291


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 484 NTVLSGGTTMYPGIADRMQKEITALAP 404
           N  ++GG TMY     R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 336 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRMS 509
           +DPP+  +Y L+GG  ++   +        FCI     G++V  PP+ N+ +     R++
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARIT 814


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,087
Number of Sequences: 59808
Number of extensions: 353936
Number of successful extensions: 907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)