Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0124.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 180 8e-46
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 180 8e-46
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 180 8e-46
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 180 8e-46
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 180 8e-46
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 180 8e-46
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 180 8e-46
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 180 8e-46
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 180 8e-46
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 173 5e-44
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 171 2e-43
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 100 1e-21
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 98 3e-21
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 69 3e-12
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 64 8e-11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 41 7e-04
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 41 7e-04
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 40 9e-04
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.55
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.55
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.55
AF039715-5|AAB96730.1| 391|Caenorhabditis elegans Hypothetical ... 30 1.3
Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical p... 27 8.9
AF039044-3|AAG24121.1| 197|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 245 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 304
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 305 SLSTFQQMWISKQEYDESGPSIVHR 329
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 232 HETSYNSIMKCDI 244
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 275 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 334
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 335 SLSTFQQMWISKQEYDESGPSIVHR 359
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 262 HETSYNSIMKCDI 274
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 180 bits (437), Expect = 8e-46
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 348
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 173 bits (422), Expect = 5e-44
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILA 347
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HET+YNSIMKCD+
Sbjct: 276 HETSYNSIMKCDI 288
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 171 bits (417), Expect = 2e-43
Identities = 81/85 (95%), Positives = 83/85 (97%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
DIRKDLYANTVLSGGT+M+PGIADRMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILA 347
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3
Query: 546 HETTYNSIMKCDV 508
HETTY SIMKCDV
Sbjct: 275 HETTYQSIMKCDV 287
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
D+R+ LY+N VLSGGTT++ G DR+ E+ +AP+ KI+I A ER WIGGSI+A
Sbjct: 287 DLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVA 346
Query: 328 SLSTFQQMWISKQEYDESGPSIVHR 254
SL TF++MW+ K+EY++ G S +H+
Sbjct: 347 SLDTFRKMWLGKKEYEDMGASAMHK 371
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 98.3 bits (234), Expect = 3e-21
Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGS 338
DIR L++N ++GG ++ G +R+ + P T+K+++ A P ERKY WIGGS
Sbjct: 346 DIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGS 405
Query: 337 ILASLSTFQQMWISKQEYDESGPSIVHR 254
IL SL TFQQMW+SK EYDESG SIV +
Sbjct: 406 ILGSLGTFQQMWVSKAEYDESGKSIVEK 433
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 78.6 bits (185), Expect = 3e-15
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 13/92 (14%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPERK 362
D R D Y + VLSGGTTMYPG+ R++KE+ L A KI+I APP RK
Sbjct: 292 DTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRK 351
Query: 361 YSVWIGGSILASL--STFQQMWISKQEYDESG 272
+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 352 HMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 16/98 (16%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALA----------------PSTMKIKIIA 377
D+R+ LY N VLSGG+TM+ A ++Q+++ L+ P + +++I+
Sbjct: 317 DVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVIS 376
Query: 376 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 263
++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 377 HKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 63.7 bits (148), Expect = 8e-11
Identities = 27/74 (36%), Positives = 49/74 (66%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
D R+ LY N L+GG ++ PGIA+++++E++ + P+T+ ++ P R + ++G I+A
Sbjct: 466 DSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVA 525
Query: 328 SLSTFQQMWISKQE 287
S STF+ IS Q+
Sbjct: 526 SASTFEDSCISLQQ 539
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = -2
Query: 505 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSI 335
+R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ W G
Sbjct: 304 LRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQE 361
Query: 334 LASLSTFQQMWISKQEYDESGPSI 263
L L+ + WI+++++DE G S+
Sbjct: 362 L--LTASKVPWINRKDWDERGDSL 383
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = -2
Query: 505 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSI 335
+R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ W G
Sbjct: 304 LRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQE 361
Query: 334 LASLSTFQQMWISKQEYDESGPSI 263
L L+ + WI+++++DE G S+
Sbjct: 362 L--LTASKVPWINRKDWDERGDSL 383
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 40.3 bits (90), Expect = 9e-04
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Frame = -2
Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK----YS 356
D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K +
Sbjct: 204 DLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIKNTPLFV 263
Query: 355 VWIGGSILASL-STFQQMWISKQEY 284
W+G S+L SL T ++ ++ +E+
Sbjct: 264 SWLGASLLGSLRETIERKSLTLEEW 288
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PYGVLPLWGSNDLNLHCRWGESCD 421
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PYGVLPLWGSNDLNLHCRWGESCD 421
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 350 PYGVLPLWGSNDLNLHCRWGESCD 421
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>AF039715-5|AAB96730.1| 391|Caenorhabditis elegans Hypothetical
protein R06A10.4 protein.
Length = 391
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 348 SVDRSSPPSLPSNRCGS--RNRSTTSLVPPLYTEVLLSVETLSYDALQQNLKRVAQIT 181
S +S PP+ P++ S R +ST S+ ++ V+ D L +LKRVAQ T
Sbjct: 328 STTQSRPPTRPTSEYNSMQRTKSTRSIRSVTRSDHGHRVDPREVDELANDLKRVAQTT 385
>Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical
protein C17G1.7 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -3
Query: 321 LPSNRCGSRNRSTTSLVPPLYTEVLLSVETLSYDALQQNLKRV 193
LPS CG R ++ PLYT++ S L+ ++L+ NLK++
Sbjct: 297 LPS--CGERYMTS-----PLYTDIRESAMALAVESLEANLKKL 332
>AF039044-3|AAG24121.1| 197|Caenorhabditis elegans Hypothetical
protein F48G7.5 protein.
Length = 197
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 210 QNLKRVAQITLVIL*INSVFNVGCK 136
Q + RVA +TL IL +N +GCK
Sbjct: 32 QMMLRVALLTLAILWVNGEIQLGCK 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,290
Number of Sequences: 27780
Number of extensions: 256666
Number of successful extensions: 701
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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