Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0124.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             148   3e-38
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.67 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  148 bits (359), Expect = 3e-38
 Identities = 70/71 (98%), Positives = 71/71 (100%)
 Frame = -2

Query: 508 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 329
           DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILA
Sbjct: 63  DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILA 122

Query: 328 SLSTFQQMWIS 296
           SLSTFQQMWIS
Sbjct: 123 SLSTFQQMWIS 133



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 546 HETTYNSIMKCDV 508
           HETTYNSIMKCDV
Sbjct: 50  HETTYNSIMKCDV 62


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -2

Query: 547 PRDHIQLHHEVRRDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 368
           P+++ +L ++   DI++  Y + V      MYP  +  M+K I+    +  KI I  P E
Sbjct: 339 PKNNKELKYD---DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKE 393

Query: 367 RKYSVWI 347
            K  +WI
Sbjct: 394 MK--IWI 398


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 60  IKIFVKKKNGNNNIPFVLRNMHITIP 137
           +K+    KNGN +   +++ + IT+P
Sbjct: 73  MKLLRTFKNGNFDFDMIVKQLEITMP 98


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 479 RIVRWYHHVPWNRRPYAK 426
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 479 RIVRWYHHVPWNRRPYAK 426
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,716
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)