Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0123.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 108 3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 47 9e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.002
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.9
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 5.8
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 5.8
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 5.8
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 5.8
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 5.8
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 5.8
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 28 5.8
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11) 27 7.6
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 108 bits (260), Expect = 3e-24
Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Frame = -3
Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
H H KF ++ K+DR +GK E NPK IK+ DAA+V ++PSKP+CVE+F EFPPLGR
Sbjct: 223 HTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGR 282
Query: 348 FAVRDMRQTVAVGVIKAVN 292
FAVRDM+QTVAVGVIK+V+
Sbjct: 283 FAVRDMKQTVAVGVIKSVD 301
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -1
Query: 548 YTPVLDCHTAHIA 510
Y+PVLDCHTAHIA
Sbjct: 216 YSPVLDCHTAHIA 228
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -3
Query: 483 VDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 334
+D+ TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -3
Query: 420 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 304
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 56 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 196
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 525 HCPHCLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKP 391
HC + A+ D + K+ ++ PK++ S D ++VP++P
Sbjct: 68 HCIYLFHIAKKLEVKDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 414 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 325
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 543 TSVGLPHCPHCLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEF 364
T + H + EI R TG++TE+N ++ S + I +V + C+ Q +
Sbjct: 242 TEINALHSGEPGQTTEINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLY 299
Query: 363 PP 358
P
Sbjct: 300 GP 301
>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
Length = 461
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 218 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 57
V++ + A++ P V K+KR SFL Y V +F ++ +V+H ++E
Sbjct: 3 VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,517
Number of Sequences: 59808
Number of extensions: 261160
Number of successful extensions: 723
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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