Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0123.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   108   3e-24
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   108   3e-24
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   108   3e-24
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    48   3e-06
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    36   0.019
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    36   0.019
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   2.2  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   8.9  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  108 bits (259), Expect = 3e-24
 Identities = 53/78 (67%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
           H  H   KF E+K KVDR TGK  E  PK +KS DA IV L+P+KPLCVESF ++ PLGR
Sbjct: 330 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 389

Query: 348 FAVRDMRQTVAVGVIKAV 295
           FAVRDMRQTVAVGVIK+V
Sbjct: 390 FAVRDMRQTVAVGVIKSV 407



 Score = 34.3 bits (75), Expect = 0.059
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 323 YTPVLDCHTAHIA 335


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  108 bits (259), Expect = 3e-24
 Identities = 53/78 (67%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
           H  H   KF E+K KVDR TGK  E  PK +KS DA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423

Query: 348 FAVRDMRQTVAVGVIKAV 295
           FAVRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441



 Score = 34.3 bits (75), Expect = 0.059
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 357 YTPVLDCHTAHIA 369


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  108 bits (259), Expect = 3e-24
 Identities = 53/78 (67%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
           H  H   KF E+K KVDR TGK  E  PK +KS DA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423

Query: 348 FAVRDMRQTVAVGVIKAV 295
           FAVRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441



 Score = 34.3 bits (75), Expect = 0.059
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 357 YTPVLDCHTAHIA 369


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = -3

Query: 483 VDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 307
           +D+ TG+      K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527

Query: 306 IKAV 295
           +K V
Sbjct: 528 LKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -3

Query: 522 CPHCLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGRFA 343
           C  C  F  +   +++  G+  +  P+ I    +A+V +     + +E+F     LGR  
Sbjct: 514 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 572

Query: 342 VRDMRQTVAVGVIKAV 295
            R    T+A G+++ V
Sbjct: 573 FRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -3

Query: 522 CPHCLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGRFA 343
           C  C  F  +   +++  G+  +  P+ I    +A+V +     + +E+F     LGR  
Sbjct: 532 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 590

Query: 342 VRDMRQTVAVGVIKAV 295
            R    T+A G+++ V
Sbjct: 591 FRAGGNTIAAGIVEKV 606


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 155 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 48
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 200 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 84
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,410
Number of Sequences: 27780
Number of extensions: 202544
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)