Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0123.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   126   1e-31
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   126   1e-31
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    60   2e-11
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   0.51 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   0.51 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   0.51 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  126 bits (304), Expect = 1e-31
 Identities = 62/80 (77%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
           H  H   KFAEIK K DR TGK+TE NPKSIKS DAAIV L P+KP+CVE+FQEFPPLGR
Sbjct: 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGR 423

Query: 348 FAVRDMRQTVAVGVIKAVNF 289
           FAVRDMRQTVAVGVIK+V F
Sbjct: 424 FAVRDMRQTVAVGVIKSVTF 443



 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 357 YTPVLDCHTAHIA 369


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  126 bits (304), Expect = 1e-31
 Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 1/80 (1%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSKPLCVESFQEFPPLGR 349
           H  H   KFA+IK K DR  GK+TE NPKSIKS DAAIV LVPSKP+C E+FQEFPPLGR
Sbjct: 364 HTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGR 423

Query: 348 FAVRDMRQTVAVGVIKAVNF 289
           FAVRDMRQTVAVGVIKAV F
Sbjct: 424 FAVRDMRQTVAVGVIKAVTF 443



 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 357 YTPVLDCHTAHIA 369


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 59.7 bits (138), Expect = 2e-11
 Identities = 31/45 (68%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = -3

Query: 525 HCPH-CLKFAEIKXKVDRXTGKSTEVNPKSIKSXDAAIVNLVPSK 394
           H  H   KFAEIK K DR TGK+TE NPKSIKS DAAIV L P+K
Sbjct: 75  HTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119



 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 548 YTPVLDCHTAHIA 510
           YTPVLDCHTAHIA
Sbjct: 68  YTPVLDCHTAHIA 80


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 KYRSCMKNCAVNSSSYFLPLVAFSQL**PCH 275
           K+  C+KN A   SSYF+  + F+ +   C+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFNLIDTKCY 124


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 KYRSCMKNCAVNSSSYFLPLVAFSQL**PCH 275
           K+  C+KN A   SSYF+  + F+ +   C+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFNLIDTKCY 129


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 KYRSCMKNCAVNSSSYFLPLVAFSQL**PCH 275
           K+  C+KN A   SSYF+  + F+ +   C+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFNLIDTKCY 129


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 144 CSPFFLRNTFR*MKYRSCMKN 206
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,275
Number of Sequences: 438
Number of extensions: 2370
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)