Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0122.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 77 1e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 75 8e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 71 2e-13
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.7
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 3.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 3.6
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 25 6.3
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 6.3
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 6.3
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 6.3
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 77.4 bits (182), Expect = 1e-15
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 204
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 205 NIGSG 219
NIGSG
Sbjct: 61 NIGSG 65
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.9 bits (176), Expect = 8e-15
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 204
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 205 NIGS 216
NIGS
Sbjct: 61 NIGS 64
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +1
Query: 25 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 204
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 205 NIGS 216
NIGS
Sbjct: 61 NIGS 64
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 7 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 177
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 178 GINVRDLIT 204
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 505 THSPYSESYYNXLAVVLQRRDWENPGVTQ 591
T PYS+ ++ +LQ+ W+ P + Q
Sbjct: 270 TFPPYSDRLKRLISTLLQQYPWQRPNIYQ 298
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 319 RSPTMTWASV-SLTKKLYEEIKIFHFVYCKAFML*ETDFIKISSGREF 459
R+PT+ + +L KK ++ +FHFV+ + +L ++ SGR++
Sbjct: 664 RAPTIYYTPFYNLLKKSAQQ-SLFHFVFDRPLLLLLNSLLEDESGRDY 710
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 327 DDDMGFGLFD 356
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,536
Number of Sequences: 5004
Number of extensions: 34439
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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