Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0122.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    81   5e-16
12_01_0426 - 3356350-3356745,3357604-3357921                           29   3.7  
01_06_1411 + 37127098-37128279                                         29   3.7  
06_03_1078 + 27418886-27419215                                         28   6.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 37/65 (56%), Positives = 50/65 (76%)
 Frame = +1

Query: 25  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 204
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 205 NIGSG 219
           ++GSG
Sbjct: 61  SVGSG 65


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 520 SESYYNXLAVVLQRRDWEN 576
           SESYY    V +Q RDW N
Sbjct: 203 SESYYFKFGVYMQHRDWSN 221


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = -1

Query: 253 LALHQRPEQHPLQSRCW*SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQLRQH 80
           L LH R  Q P+  R     H H  L       L    LHL P L R  +  H+LR+H
Sbjct: 94  LHLHLRHHQFPVYRRGHHPDHDHDPLLH----PLPRQELHLDPSLRRALRSWHRLRRH 147


>06_03_1078 + 27418886-27419215
          Length = 109

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 150 ARSVRQSLGRHQCP*PDHQHRLWSGCCSGRWW 245
           +RS R   G  + P P H  R+W+G   G WW
Sbjct: 29  SRSNRAPSGAFRPPDPRHPGRIWTG---GGWW 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,885
Number of Sequences: 37544
Number of extensions: 263999
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)