Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0122.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -1

Query: 430 SQFLIT*KLYNRQNGIF-----LFLHKAS*SKRPKPM 335
           S+ +++ +LY+RQNG+      L L K   + +P PM
Sbjct: 275 SKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 487 LEGGPGTHSPYSESYYNXLAVVL 555
           L+G PG +SPY+ +    +A+VL
Sbjct: 26  LQGFPGKNSPYTVTQAILIALVL 48


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 585 NARVFPVTTL*NDGQXIVIRLTIGRMGTGPPL 490
           N + F VT L NDG    + +   ++G G PL
Sbjct: 74  NGKTF-VTILRNDGVPSSLNVISNKIGNGGPL 104


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 111 HLESGGCRCRAILARSVRQSLGRHQCP*PDHQHRLWSGCC 230
           +L SGGC C+      V +     +CP    +H   S  C
Sbjct: 241 YLPSGGCHCKPGYQADVEKQ-ECTECPIGKFKHEAGSHSC 279


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 481 VDLEGGPGTHSPYSESYYNXLAVVLQ 558
           +DL+ GP  H+  +E Y     ++++
Sbjct: 243 IDLDIGPPLHADQAEEYKKIQQILIR 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,319
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)