Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0121.Seq
(459 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 24 0.78
AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head orthol... 23 1.4
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 22 3.2
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 22 3.2
AY052392-1|AAL15466.1| 388|Tribolium castaneum tryptophan oxyge... 21 4.2
AY052390-1|AAL15464.1| 388|Tribolium castaneum tryptophan oxyge... 21 4.2
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 21 5.5
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 21 5.5
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 21 5.5
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 21 5.5
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 21 5.5
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 21 5.5
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 21 5.5
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 21 5.5
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 21 5.5
X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein. 21 7.3
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 7.3
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 23.8 bits (49), Expect = 0.78
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 381 LQCVVLRKSQDDNKDKXKPTT 443
+QC V RK + K+K KP +
Sbjct: 262 VQCAVKRKEKKAQKEKDKPNS 282
>AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head
orthologue protein.
Length = 431
Score = 23.0 bits (47), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 153 KVIRRSFTDVKSPYS 109
K RRS+T K PYS
Sbjct: 130 KTYRRSYTHAKPPYS 144
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.8 bits (44), Expect = 3.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 137 PSPT*SPHTPQGVCHPKL---PPRRTPPCFCHERASVLAERRVPVS 9
P P SPH P HP + P++ P H+ + L +++P++
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKPLN-LTIKKMPIA 276
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 21.8 bits (44), Expect = 3.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 137 PSPT*SPHTPQGVCHPKL---PPRRTPPCFCHERASVLAERRVPVS 9
P P SPH P HP + P++ P H+ + L +++P++
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKPLN-LTIKKMPIA 168
>AY052392-1|AAL15466.1| 388|Tribolium castaneum tryptophan
oxygenase protein.
Length = 388
Score = 21.4 bits (43), Expect = 4.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 270 HSTWARWGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVL 398
H + W +E ++ + +VLE L + RL VVL
Sbjct: 58 HQAYELWFKQIIYELDSIRNIFSDVLEESQTLEILKRLNRVVL 100
>AY052390-1|AAL15464.1| 388|Tribolium castaneum tryptophan
oxygenase protein.
Length = 388
Score = 21.4 bits (43), Expect = 4.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 270 HSTWARWGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQCVVL 398
H + W +E ++ + +VLE L + RL VVL
Sbjct: 58 HQAYELWFKQIIYELDSIRNIFSDVLEESQTLEILKRLNRVVL 100
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 68 SPQDLSTNGAPPRSTPP 84
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 113 TPQGVCHPKLPPRRTPP 63
+PQ + PPR TPP
Sbjct: 112 SPQDLSTNGAPPRSTPP 128
>X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein.
Length = 524
Score = 20.6 bits (41), Expect = 7.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 432 SSCLYCRLDFSEAL 391
+SC YC + F +A+
Sbjct: 471 NSCQYCNIAFGDAV 484
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 20.6 bits (41), Expect = 7.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2
Query: 110 PQGVCHPKLPP 78
PQG+ +P+ PP
Sbjct: 75 PQGMPYPRFPP 85
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,987
Number of Sequences: 336
Number of extensions: 1873
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -