Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0121.Seq
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 44 6e-05
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 39 0.002
05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381... 30 1.0
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 29 1.4
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 29 1.4
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482... 28 3.1
03_06_0004 + 30936670-30936726,30936858-30936905,30937045-309370... 28 3.1
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 27 5.5
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 7.3
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 27 7.3
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 27 7.3
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 27 9.6
04_03_0091 - 11043023-11043090,11043458-11043566,11044431-110445... 27 9.6
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 27 9.6
03_05_0543 - 25404630-25405408,25405461-25405605 27 9.6
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 27 9.6
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 44.0 bits (99), Expect = 6e-05
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +2
Query: 29 QLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICLG 208
++ +L H + M V VE V D + A + V+ + T DL +++DF+ CLG
Sbjct: 1442 EVASFLHHQEKMNVLVEPDVHD--IFARIPGYGFVQT---FYTQDTSDLHERVDFVACLG 1496
Query: 209 GDRDPXGC*LTFSSNRAAVMAFHLGSLGF 295
GD F ++ V++F+LGSLGF
Sbjct: 1497 GDGVILHASNLFRTSVPPVVSFNLGSLGF 1525
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 207 GVTGTLXDASSLFPAIVPP*WHSTWARWGFLTPFEFNNFQEQVMNVLEGHAAL----TLR 374
G G + AS+LF VPP GFLT F F++ + V+ G+ L TLR
Sbjct: 1496 GGDGVILHASNLFRTSVPPVVSFNLGSLGFLTSHNFEGFRQDLRAVIHGNNTLGVYITLR 1555
Query: 375 SRLQCVVLRKSQ 410
RL+C + R +
Sbjct: 1556 MRLRCEIFRNGK 1567
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 288 WGFLTP-FEFNN-FQEQVMNVLEGHAALTLRSRLQCVVLRKSQDDNKDKXKPTTILVLN 458
W +LT E + +++ + NVL G ++TLR+RLQC V+R + D + +P ILVLN
Sbjct: 375 WNWLTAEMEASEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEP--ILVLN 431
>05_04_0161 +
18635635-18635788,18637117-18637295,18638032-18638145,
18638274-18638368,18638604-18638710,18639455-18639528,
18641170-18641400,18641892-18642197
Length = 419
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 29 QLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICLG 208
++V WL ++ +FVE V + L+ E F ++ T L K+D I+ LG
Sbjct: 178 EMVRWLKEHNNINIFVEPRVSKE-LVTEDSYFNFIQTWDNDEEMKT--LHTKVDLIVTLG 234
Query: 209 GDRDPXGC*LTFSSNRAAV 265
GD C + + S + V
Sbjct: 235 GDGTVLWCHVIYDSAKNEV 253
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 119 PHTPQGVCHPKLPPRRTPPC 60
PH +C P+LPP R+P C
Sbjct: 9 PHLRLDLCSPRLPPLRSPGC 28
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2
Query: 149 SSDVPSPT*SPHTPQGVCHPKLPPRRTP 66
SS PSP SP P P LPPRR+P
Sbjct: 26 SSSSPSP--SPSPPSSSRKPPLPPRRSP 51
>04_03_0972 +
21347212-21347284,21347966-21348009,21348153-21348237,
21348810-21349358,21350291-21350416,21350772-21350936,
21351243-21351310,21351529-21351618,21351740-21351830,
21352214-21352812
Length = 629
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 277 VECHHGGTIAGKSELASXRVPVTPQAYDEVDLISEIVGASSE 152
V+C +G + S L + ++P TP D +++++V S+
Sbjct: 407 VQCSNGDSTTISSTLVNVKIPATPGYVDPCYVVNQVVTPKSD 448
>03_06_0004 +
30936670-30936726,30936858-30936905,30937045-30937080,
30937184-30937258,30937568-30937692,30937770-30937779,
30938125-30938296,30938547-30938665,30938868-30938978,
30939053-30939197,30939340-30939472,30939545-30939620,
30940141-30940206,30940308-30940415,30940750-30940857,
30940948-30941145,30941343-30941591
Length = 611
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -3
Query: 151 SHQTFLHRRKVPILRKECVIQNCRLDEH 68
SHQ FLHR KV I+ +E V+ NC ++E+
Sbjct: 420 SHQ-FLHR-KVSIVSQEPVLFNCSIEEN 445
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = -2
Query: 305 GRQKTPTSPSGMP--SRRH 255
G QKTPTSP G P RRH
Sbjct: 19 GGQKTPTSPRGAPGADRRH 37
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 287 LGFSDALRVQQLSGASHERFRRTRGSNFK-VPFAMRSASEKSRRQ*RQXEADHDTGAE 457
+GF R+ + S ASH RR RG + + +P E + + ++D +TG E
Sbjct: 716 MGFGILFRLDESSLASHLNERRVRGEDEEALPDVESQKLESNAELDGELDSDSETGKE 773
>06_02_0041 + 10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 329 LLKVVELEGRQKTPTSPSGMPSRR 258
+L +EL+GR+ SP +PSRR
Sbjct: 992 ILHCLELDGRESANKSPCRLPSRR 1015
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 137 PSPT*SPHTPQGVCHPKLPPRRTPP 63
P PT P P G PKL P R PP
Sbjct: 11 PQPTSPPARP-GPTEPKLAPSRAPP 34
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 DKSMVVFVEAAVLDDTLLA-EYGDFTSVKERLMTFRASTDDLTDKIDFIICLGGD 214
DK F+ L++ L + GD ++KE + D+ D I+++ +GGD
Sbjct: 476 DKDHSGFITVDELEEALTKYDMGDEATIKEIIAEVDTDHDNRIDYIEYLENIGGD 530
>04_03_0091 -
11043023-11043090,11043458-11043566,11044431-11044577,
11044678-11044776,11044857-11044982,11045448-11045582,
11046391-11046468,11046553-11046678,11046828-11046968
Length = 342
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 199 YDEVDLISEIVGASSESHQTFLHRRKVPILRKECVIQNC 83
Y + I EI G ++ F H PIL + ++ +C
Sbjct: 114 YKDRKRIPEITGGFEQNRDHFRHNDSRPILHNDTILASC 152
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 323 KVVELEGRQKTPTSPSGMPSRRHD 252
KVVE+EG SPSG S R D
Sbjct: 853 KVVEIEGADDVRFSPSGTDSGRSD 876
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 137 PSPT*SPHTPQGVCHPKLPPRRTP 66
PSPT SP TP P+ PRR P
Sbjct: 119 PSPTPSPVTPPPQQPPQPEPRRPP 142
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 168 TISLIRSTSSYAWGVTGTLXDASSL 242
T+ L+R ++Y+WG TG SSL
Sbjct: 214 TVHLLRVAAAYSWGGTGVDRAGSSL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,551
Number of Sequences: 37544
Number of extensions: 250296
Number of successful extensions: 889
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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