Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0121.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.91 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 384 QCVVLRKSQDDNKDKXKPTT 443
           QC V RK +   K+K KP +
Sbjct: 262 QCAVKRKEEKAQKEKDKPNS 281


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 285  RWGFLTPFEFNNFQEQVMNVLEGHAALTL 371
            R GF+TPFE  +F   + + L  +A L +
Sbjct: 979  RVGFVTPFEHRHFISGIDSNLHVYAPLKI 1007


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 104 GVCHPKLPPRRTPPCFCHER 45
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 104 GVCHPKLPPRRTPPCFCHER 45
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 259 GTIAGKSELASXRVPVTPQAYDEVDLISEIVGAS 158
           G   G  +  +  +  T Q+YD+ DL+  +  A+
Sbjct: 96  GAQRGNEQRCTVTMHGTVQSYDKYDLLENVNNAA 129


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 47  VHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKI 187
           V D+++  +VE  +    ++ E G+F     R +      D+ TD++
Sbjct: 54  VEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQL 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,457
Number of Sequences: 438
Number of extensions: 2267
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)