Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0121.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21070.2 68416.m02664 ATP-NAD kinase family protein contains ...    52   2e-07
At3g21070.1 68416.m02663 ATP-NAD kinase family protein contains ...    52   2e-07
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    45   3e-05
At4g35930.1 68417.m05111 expressed protein                             30   0.86 
At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH...    28   2.6  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   3.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   3.5  
At3g04260.1 68416.m00450 SAP domain-containing protein contains ...    27   4.6  

>At3g21070.2 68416.m02664 ATP-NAD kinase family protein contains
           Pfam domain, PF01513: ATP-NAD kinase
          Length = 524

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +3

Query: 207 GVTGTLXDASSLFPAIVPP*WHSTWARWGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQ 386
           G  GT+  A+S+F   VPP    +    GF+TPF    +++ +  +L+G  ++TLR RLQ
Sbjct: 289 GGDGTVLWAASMFKGPVPPIVPFSMGSLGFMTPFHSEQYRDCLEAILKGPISITLRHRLQ 348

Query: 387 CVVLRKSQDDNKDKXKP-TTILVLN 458
           C ++R   D    + +P  T+LVLN
Sbjct: 349 CHIIR---DKATHEYEPEETMLVLN 370



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 30/98 (30%), Positives = 44/98 (44%)
 Frame = +2

Query: 26  VQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICL 205
           V +V WL   K + ++VE  V ++ LL+E   F  V+        S   L  K+D +I L
Sbjct: 232 VDMVRWLRTQKGLNIYVEPRVKEE-LLSESSSFNFVQTWEDDKEISL--LHTKVDLLITL 288

Query: 206 GGDRDPXGC*LTFSSNRAAVMAFHLGSLGFSDALRVQQ 319
           GGD         F      ++ F +GSLGF      +Q
Sbjct: 289 GGDGTVLWAASMFKGPVPPIVPFSMGSLGFMTPFHSEQ 326


>At3g21070.1 68416.m02663 ATP-NAD kinase family protein contains
           Pfam domain, PF01513: ATP-NAD kinase
          Length = 530

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +3

Query: 207 GVTGTLXDASSLFPAIVPP*WHSTWARWGFLTPFEFNNFQEQVMNVLEGHAALTLRSRLQ 386
           G  GT+  A+S+F   VPP    +    GF+TPF    +++ +  +L+G  ++TLR RLQ
Sbjct: 295 GGDGTVLWAASMFKGPVPPIVPFSMGSLGFMTPFHSEQYRDCLEAILKGPISITLRHRLQ 354

Query: 387 CVVLRKSQDDNKDKXKP-TTILVLN 458
           C ++R   D    + +P  T+LVLN
Sbjct: 355 CHIIR---DKATHEYEPEETMLVLN 376



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +2

Query: 26  VQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVK--ERLMTFRASTDD--LTDKIDF 193
           V +V WL   K + ++VE  V ++ LL+E   F  V+  E +M + A  +   L  K+D 
Sbjct: 232 VDMVRWLRTQKGLNIYVEPRVKEE-LLSESSSFNFVQTWEDVMIYDADKEISLLHTKVDL 290

Query: 194 IICLGGDRDPXGC*LTFSSNRAAVMAFHLGSLGFSDALRVQQ 319
           +I LGGD         F      ++ F +GSLGF      +Q
Sbjct: 291 LITLGGDGTVLWAASMFKGPVPPIVPFSMGSLGFMTPFHSEQ 332


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +3

Query: 207 GVTGTLXDASSLFPAIVPP*WHSTWARWGFLTPFEFNNFQEQVMNVLEGHAAL-----TL 371
           G  G +  AS+LF   VPP         GFLT   F +F++ +  V+ G+  L     TL
Sbjct: 750 GGDGVILHASNLFKGAVPPVVSFNLGSLGFLTSHPFEDFRQDLKRVIHGNNTLDGVYITL 809

Query: 372 RSRLQCVVLRKSQ 410
           R RL+C + RK +
Sbjct: 810 RMRLRCEIYRKGK 822



 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 30/85 (35%), Positives = 43/85 (50%)
 Frame = +2

Query: 41  WLVHDKSMVVFVEAAVLDDTLLAEYGDFTSVKERLMTFRASTDDLTDKIDFIICLGGDRD 220
           +L H ++M V VE  V D  + A    F  V+     +   T DL +++DF+ CLGGD  
Sbjct: 700 FLYHQENMNVLVEPEVHD--VFARIPGFGFVQT---FYIQDTSDLHERVDFVACLGGDGV 754

Query: 221 PXGC*LTFSSNRAAVMAFHLGSLGF 295
                  F      V++F+LGSLGF
Sbjct: 755 ILHASNLFKGAVPPVVSFNLGSLGF 779


>At4g35930.1 68417.m05111 expressed protein 
          Length = 321

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 137 PSPT*SPHTPQGVCHPKLPPRRTPPCFCHERASVLAERRVPVSGR 3
           P+   SPHTP+   H   PP RT      +  +VL + + P   R
Sbjct: 237 PTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSR 281


>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
           99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
           thaliana]
          Length = 292

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 178 SEIVGASSESHQTFLHRRKVPILRKECVIQNCRLDEHHHAFVMNEPVY*LNEG 20
           S ++ A+   H    H   VP+ R    + N +L++ HH +  N+P    N G
Sbjct: 115 SVMMAANDHYHPLLHHHHGVPMQRPANSV-NVKLNQDHHLYHHNKPYPSFNNG 166


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 146 SDVPSPT*SPHTPQGVCHPKLPPRRTPPCFC 54
           S  P+P+   HTP        P   TPPC C
Sbjct: 77  SHTPTPSTPSHTPTPHTPSHTPTPHTPPCNC 107


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 146 SDVPSPT*SPHTPQGVCHPKLPPRRTPPCFC 54
           S  P+P+   HTP        P   TPPC C
Sbjct: 77  SHTPTPSTPSHTPTPHTPSHTPTPHTPPCNC 107


>At3g04260.1 68416.m00450 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 913

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 205 QAYDEVDLISEIVGASSESHQTFLHRRKVPILRKECVIQNCRLDE 71
           ++YD V  ++E++G   E H+      K   L  EC  + C + E
Sbjct: 299 ESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKE 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,642,903
Number of Sequences: 28952
Number of extensions: 186146
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)