Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   3.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 594 QEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRK 472
           ++    EQ       G++T+ND D   + T    + P +RK
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 594 QEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRK 472
           ++    EQ       G++T+ND D   + T    + P +RK
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 645 DSRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQ 517
           D++  +TK        +   T ++ + R ++  AT +N+NDK+
Sbjct: 291 DNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKR 333


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 594 QEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRK 472
           ++    EQ       G++T+ND D   + T    + P +RK
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 645 DSRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQ 517
           D++  +TK        +   T ++ + R ++  AT +N+NDK+
Sbjct: 291 DNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKR 333


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 177 NGNINFNKPCITLWLC 130
           NGN+   K C   W C
Sbjct: 161 NGNVPLGKSCNRYWQC 176


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 159 NKPCITLWLCVVLSL*MHLKIVMAVPRLVDSF 64
           N P +TL LC ++S  + + I + + R V  F
Sbjct: 310 NDPKVTLELCGMISTYLIIMIQLDLARTVPKF 341


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 334 VCALLVVYANLIPLHICWSHQFLRTFW 414
           V ++  + A LI   I W    L TFW
Sbjct: 249 VVSIFYMSAYLISNPIMWDRVMLLTFW 275


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 200 HGSRCRCLRNC 232
           +G++C CLR C
Sbjct: 186 NGNKCCCLRTC 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,975
Number of Sequences: 336
Number of extensions: 2208
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)