Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    30   0.33 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.4  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   7.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   7.1  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -1

Query: 630 STKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTR----TTVAPNIRK 472
           S  A++      QE+   E +  T+ DGA ++N+N +    TT     T+   NI K
Sbjct: 280 SLDADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITK 336


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 ESYCLSLSLDVVAPSDLVLPRCSECVSSC 595
           ESY +  +  VV PSD ++ +C E +  C
Sbjct: 228 ESYVMYSNKLVVPPSDSIIKKCEETLQGC 256


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 376 EAESSSHKQQEARKQSNRVVEKSTDGDN 293
           EA     +Q++  +QSN+ +   TDGDN
Sbjct: 376 EAPIPPRRQKKTDEQSNKKLLNETDGDN 403


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 629 LQKPKREHVRSHKKKHIQSNEEEQDLTEQLRPT 531
           ++K   EH R+ K+  IQ +E+E++   + R T
Sbjct: 340 IEKNDEEHERAAKRIKIQPSEDEKEAEAECRLT 372


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 39  ILTSYKLLKMSQPNEERPSQFLNAFTNL 122
           ++  +KLLK    N   PSQ  ++FTNL
Sbjct: 822 LIAVHKLLKRVSINAVDPSQTTSSFTNL 849


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = -1

Query: 636 ARSTKAEEGTCQKSQEETHSEQRG-RTRSDGATTS-NDNDKQYDSTTRTTVAPNIRKRS* 463
           ++ T AE G   K Q+   S+      +  G     NDN++  D     T   NIRK S 
Sbjct: 195 SKKTGAEIGDAMKGQDTLGSDNLILEAKKKGLKLELNDNNEIVDQRQILTAGLNIRKSS- 253

Query: 462 DLSNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVR 358
             +N +R   K    N KSS K     + + +Q R
Sbjct: 254 -ANNSMRDDKK---RNHKSSYKRSLSPSTRYHQDR 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,341
Number of Sequences: 5004
Number of extensions: 37158
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)