Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_23074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      28   7.5  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   27   9.9  
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)                27   9.9  

>SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 CSSLLLYCSVCALLVVYANLIPLHICWSHQFLRTF 411
           C    ++  V +++ +  N I L + W+HQ +RT+
Sbjct: 55  CRRACIFVCVLSVVAIVTNSIVLLVVWTHQRMRTY 89


>SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 600 KSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPN 481
           KS  +  ++   +T  DG  +S+DND   D   ++ + PN
Sbjct: 410 KSDFQPSADGVDKTPDDGTPSSSDNDDTQDDDDKSDIQPN 449


>SB_25126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = -1

Query: 585 THSEQRGRT-RSDGATTSNDNDKQY---DSTTRTTVAPNIRKRS*DLSNQIRLKMKILPP 418
           T ++Q+ R  RS  +T  + + + Y   D +T+ T+ P+I + S  L+ +I +  +I  P
Sbjct: 10  TQADQKTRPLRSTRSTQRSIDPEIYRPSDPSTQQTIDPDIHRPSDPLAQRI-IDPEIHRP 68

Query: 417 NPKSSQKLMAPTN 379
           +  S+Q+ + P N
Sbjct: 69  SKPSAQRTIGPAN 81


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 644 TPEHVLQKPKREHVRSHKKKHIQSNEEEQDLTEQLRPTIMISNTI 510
           TP H++ KP+R   RS   +HI  NE E+ L       I+ + T+
Sbjct: 147 TPVHIVGKPRRISRRS-PPQHIDKNERER-LVNMASKLIVATETV 189


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 516  YDSTTRTTVAPN-IRKRS*DLSNQIRLKMKILPPNPKSSQKLMAPT-NMKRNQVRINNKK 343
            YDS  +  V+   +RKR   LSN +     ++P    SS++ + P+   KRN  RIN +K
Sbjct: 1135 YDSVKKAKVSEKPLRKRV--LSNNMITSSLMIPKRHASSKENVVPSYKPKRNINRINQQK 1192


>SB_23074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 642 SRARSTKAEEGTCQKSQEETH--SEQRGRTRSDGATTSNDNDKQYDSTTR 499
           S   +T+    T Q  +   H  SEQ  RT  D  T   +N +  +STT+
Sbjct: 193 SEQHNTRCRNSTTQDVRTAQHKMSEQNNRTTQDVGTEQQNNTRCQNSTTQ 242


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 623 KPKREHVRSHKKKHIQSNEEEQDL 552
           KPKREH +SH++  + S     +L
Sbjct: 658 KPKREHKKSHRRHRVMSPSAPDEL 681


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 638 EHVLQKPKREHVRSHKKKH 582
           +H   KPK+E  + HKKKH
Sbjct: 161 KHKKPKPKKEKKKKHKKKH 179


>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
          Length = 253

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 632 VLQKPKREHVRSHKKKHIQSNEE 564
           +LQ P   HV+SH   H+ SN +
Sbjct: 177 ILQSPTDHHVQSHTDHHVLSNTD 199



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 638 EHVLQKPKREHVRSHKKKHIQSNEEE 561
           +H +Q    +HV+SH  +H+QS+ ++
Sbjct: 223 DHHVQSHTDQHVQSHTDQHVQSHTDQ 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,317,009
Number of Sequences: 59808
Number of extensions: 285972
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)