Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    28   0.29 
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    26   0.89 
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    26   0.89 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.8  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   4.8  

>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 0.29
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 636 ARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDND 523
           AR   AE GT +         +RG TR +  + +NDND
Sbjct: 127 ARIIDAELGTLEHVHSGATPRRRGLTRRESNSDANDND 164


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 633 RSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDND 523
           R   AE GT +         +RG TR +  + +NDND
Sbjct: 128 RIIDAELGTLEHVHSGATPRRRGLTRRESNSDANDND 164


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 633 RSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDND 523
           R   AE GT +         +RG TR +  + +NDND
Sbjct: 14  RIIDAELGTLEHVHSGATPRRRGLTRRESNSDANDND 50


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 101  FKCIHKLKTTQSHKVM 148
            FKC+ K KTT  H+++
Sbjct: 1461 FKCVDKNKTTLPHEII 1476



 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 602 RSHKKKHIQSNEEEQDLTEQLRPTI 528
           R  KKK I+ ++E++D   Q  PT+
Sbjct: 54  RKKKKKEIRYDDEDEDEGPQPDPTL 78


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 620 PKREHVRSHKKKHIQSNEEEQDLTE 546
           P  EH+   +++  +++EEE D +E
Sbjct: 75  PDEEHLEEEQEEEAEADEEEADESE 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,134
Number of Sequences: 2352
Number of extensions: 9030
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)